Release 56
(Apr 24, 2025)

Whole genome analysis for QTL/association enrichment

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Version: Enrich S: beta v0.8
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Data:

Number of texture traits:25
Number of QTL / associations found:1,717
Number of chromosomes where QTL / associations are found:19

Chi-squared (χ2) test: are texture traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome X2063.63675189e-411.005882e-40
Chromosome 1191330.96350189e-411.005882e-40
Chromosome 215359.96775189e-411.005882e-40
Chromosome 31041.86925187.878078e-2101.871044e-209
Chromosome 41110.88500181.356028e-2243.680647e-224
Chromosome 5942.49525181.341682e-1882.549196e-188
Chromosome 629.74050180.040047074.227191e-02
Chromosome 7975.06675181.488094e-1953.141532e-195
Chromosome 81369.86875184.183565e-2802.649591e-279
Chromosome 91218.55825181.180806e-2474.487063e-247
Chromosome 101369.86875184.183565e-2802.649591e-279
Chromosome 112016.12675189e-411.005882e-40
Chromosome 121182.11375187.597707e-2402.405941e-239
Chromosome 131369.86875184.183565e-2802.649591e-279
Chromosome 141331.21100188.25396e-2723.920631e-271
Chromosome 150.11025180.9983293258231159.983293e-01
Chromosome 161699.04750189e-411.005882e-40
Chromosome 171571.45575189e-411.005882e-40
Chromosome 181655.96350189e-411.005882e-40

Chi-squared (χ2) test: Which of the 25 texture traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Average instron (star probe) force 107.08524 24 1.814099e-12 5.669059e-12
Carcass temperature 75.8971 24 2.703043e-07 5.198160e-07
Connective tissue amount 50.35907 24 0.001274301 1.517025e-03
Cooking loss 226.2122 24 8.124964e-35 4.062482e-34
Cooking yield 88.47824 24 2.570792e-09 5.842709e-09
Cooling loss 463.88249 24 5.107443e-83 1.276861e-81
Drip loss 341.34009 24 7.248778e-58 6.040648e-57
Fiber type I myosin isoform percentage 84.85001 24 1.008405e-08 2.100844e-08
Fiber type II myosin isoform ratio 8.53375 24 0.9984359 9.999974e-01
Firmness 63.60724 24 1.943821e-05 3.239702e-05
Lactate / diameter of white fibers 54.38711 24 0.0003783813 4.978701e-04
Myofibril fragmentation index 159.65155 24 5.223266e-22 2.176361e-21
Number of white fibers 54.38711 24 0.0003783813 4.978701e-04
Pale, soft, and exudative meat 52.22877 24 0.0007303925 9.129906e-04
R-value 55.29701 24 0.0002854387 4.459980e-04
R-value / diameter of white fibers 54.38711 24 0.0003783813 4.978701e-04
Sarcomere length 240.31856 24 1.358208e-37 8.488800e-37
Shear firmness 4.26688 24 0.9999974 9.999974e-01
Shear force 416.53953 24 2.997556e-73 3.746945e-72
Shear force at first peak 93.60076 24 3.625198e-10 9.062995e-10
Tenderness score 115.30502 24 6.59991e-14 2.357111e-13
Thawing loss 100.68658 24 2.293847e-11 6.371797e-11
Total shear work 47.36214 24 0.003024972 3.437468e-03
Water holding capacity 74.47582 24 4.500503e-07 8.036613e-07
chew score 37.02204 24 0.04353892 4.732491e-02

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:19 χ2=227638.817750
Number of traits:25 df=432
Number of QTLs:1,717 p-value=0

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

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