NAGRP Blast Center

Start with a sequence database:

Aqua Species:
  1. All Marine Species ESTs
  2. Altlanta Salmon TIGR Indices
  3. Catfish TIGR Indices
  4. Rainbow Trout TIGR Indices
  5. Vannamei (shrimp) ESTs
  6. Zibrafish Genome (by chromosome)
Cattle:
  1. Genome (by chromosome)
  2. RefSeq
  3. SNP db (BMC data)
  4. SNP db (NCBI data)
  5. TIGR Indices
  6. UniGene
Chicken:
  1. Genome (by chromosome)
  2. SNP db (NCBI data)
  3. TIGR Indices
  4. UniGene
Pigs:
  1. Genome (partial)
  2. Pig Oligo Array sequences (1, 2)
  3. SNP db (NCBI data)
  4. TIGR Indices
  5. UniGene
Sheep:
  1. SNP db (NCBI data)
  2. UniGene
Human:
  1. Genome (by chromosome)
  2. RefSeq
  3. UniGene
Non-
species-
specific:
  1. WGS Genomic Sequences
  2. Mammalian RefSeq
  3. Sequence Taged Sites
  4. Gene Ontology Sequences

Start with a blast program:

  1. Regular BLAST
  2. Mega BLAST
  3. BLAST 2 sequences
  4. mpiBLAST

Help Desk:

  • Need to do batch blast and data mining?
  • Need to add a specific sequence set?

    •   Contact us

Documentations
Available sequence databases:
All sequences are from public databases (such as NCBI and Ensembl) or from publicly available data resources (such as BMC and Sanger). The sequence databases are periodically updated on daily or weekly basis depending on how frequently the data source are changed.
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Contact: NAGRP Bioinformatics Team 		November 07, 2009 (Saturday)