Manuals

1. ASReml user guides
2. Blat: Program Specifications and User Guide
3. Blast: program options and helps
4. Blastz: a genome sequence alignment program
5. CAP3 (General helps | Assembly | Improved)
6. Clustalw: README
7. CriMap: README
8. ContigImage
9. Exonerate
10. fastPHASE (Abstract)
11. Long Horn Array DB
12. map2GO_slim
13. miranda - find miRNA sites
14. MPIblast
15. PHASE ( web, FAQ, etc.)
16. Primer3: README
17. RepeatMasker
18. For RNA works: Bowtie | Cistematic | SamTools
19. Sibs: README
20. WU-Blast: Topics

    Tutorials

21. BioPerl
22. Crimap (an anatomy | a tour)
23. OMIM
24. GBrowse Users Tutorial
25. GBrowse Admin Tutorial
26. GBrowse Configurations
27. DNA Sequence Analysis: GCG
28. DNA Sequence Analysis: Staden
29. Plink: Whole genome association analysis toolset

File formats:

• ACE File Format
• AGP File Format
• ASN.1 Format
• Fasta File Format
• GFF3 File Format (wiki)
• GFF3 File Format (SO)
• NCBI Accession Format

Links:

• Helix@NIH