Genome Informatics Resources
Animal Genome Data Resources
Maps
:
[ NCBI (
Cattle
,
Chicken
,
Horse
,
Pig
,
Sheep
); Ensembl (
Cattle
,
Chicken
,
Horse
,
Pig
,
Sheep
); ARKDB (
Chick
,
Cow
,
Horse
,
Pig
,
Salmon
,
Sheep
,
Turkey
); INRA (
Cattle
,
Pigs
);
RH
(
Cattle
,
Pigs
,
Chicken
,
Sheep
) ]
QTL
:
[
Cattle
,
Pig
,
Chicken
,
Goat
,
Horse
,
Sheep
]
SNP Chips
:
Cattle
|
Pig
|
Sheep
|
SNPchimp
HapMap
:
Cattle
|
Pig
|
Sheep
Genomes
:
Chicken
,
Cattle
,
Pigs
,
Sheep
,
Horse
NAGRP Data Repository
: for
all livestock species
Community Activities
Updates
:
NRSP8 Bioinformatics Reports
Events
:
Conferences, Meetings & Workshops
News
:
Google
|
NCBI
|
USDA
AnGenMap
:
Animal Genomics Discussion Group
Directory
:
Extended AnGenMap Members
NRSP8
:
USDA-NIFA
|
The Community
Interest Groups
:
Web sites and communications
Neighborhoods
Ontology:
GO
|
MPO
|
SO
|
OBO
|
BioOntology
Functional genomics
:
BioGPS
|
ExPASy
|
GeneCards
|
HGNC
|
VGNC
|
MIBBI
|
KEGG
|
Reactom
|
IONH pathways
|
DGIL Porcine Translational DB
|
FAANG Mine
Phenotypes:
:
Monarch Initiative
AG2PI
Interest groups
:
AgBioData
|
farmGTEX
|
FAANG
NAGRP Endeavors
Services
: (
CorrDB
|
QTLdb
|
JBrowse
)
Service developments:
Databases and Web Sites
[
Data Repository
] [
Tools Repository
]
ToolBox
|
NAGRP Data Sharing Platform
Ontologies (
VT
|
LPT
|
CMO
|
LBO
|
VBO
)
An introductory list of animal genomics software
Projects and Publications
Projects
: The Past, the Current, and the Potentials
Publications:
Abstracts
and
Papers
Knowledgebase Pool
Highlighted:
Manuals / Tutorials / File Formats
Glossaries:
Animal Genetics
|
Genomics
|
New Terms
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USA · USDA · NRPSP8 · Program for Applied Bioinformatics
.
Contact:
Bioinformatics Team
Helpdesk